 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | csbX-bofC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| csbX | - | 2836695..2838002 | sigma-B-transcribed gene | COG0477 | ||
| bofC | - | 2836135..2836647 |
| Operon evidence: | insertional mutant and examination of bofC expression; plasmids and merodiploid |
|---|---|
| Reference: | Gomez M & Cutting SM (1997), Gomez M & Cutting SM (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -43:+5 | 2838024..2838071 | CTAACAGGATTACAATTCAGCAAGCTTGGGTACATACTCCATTGATAC |
Gomez M & Cutting SM (1997): PE |
| SigF | Promoter | -42:+5 | 2836668..2836714 | ATAAAACGGTTAAGCAGTAGCCTCTTTGGTCAAACTAATCATAAACG |
Gomez M & Cutting SM (1997): PE NB |
| SigG | Promoter | -42:+5 | 2836668..2836714 | ATAAAACGGTTAAGCAGTAGCCTCTTTGGTCAAACTAATCATAAACG |
Gomez M & Cutting SM (1997): PE RG |
| SpoVT | Negative | ND | ND | ND |
Bagyan I, et al. (1996): DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTGAAGACATGTATTCATGTCTTTTTTTTCGTGAAA >>>>>> <<<<<< |
bofC |
|