Regulated Operon: degSU

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
degS sacU - 3644409..3645566 two-component sensor histidine kinase COG4585  
degU sacU, iep - 3643637..3644326 two-component response regulator COG2197  

Operon evidence: lacZ fusions
Reference: Msadek T, et al. (1990), Soldo B, et al. (1996), Genbank U56901
Comments: The terminator downstream of degU suggests that the downstream yviA gene does not belong to this operon.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -52:+15 3645673..3645739 ATTCGTACAGTCTTTAGAATTTTTGTGCGTATTTTGGTATCATAAAGAGTAGATAGTATATAAAAAT Msadek T, et al. (1990): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAGGAGACTTGCCTTTTACTAGGCAGGTCTTTTTTTAGGCTGCC
     >>>>>>>>>      <<<<<<<<<
3643603..3643626
11..34
-15.5
degU

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai