Regulated Operon: dppABCDE

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
dppA dciAA + 1359708..1360532 D-alanyl-aminopeptidase COG2362  
dppB dciAB + 1360549..1361475 dipeptide ABC transporter (permease) COG0601  
dppC dciAC + 1361481..1362443 dipeptide ABC transporter (permease) COG1173  
dppD dciAD + 1362448..1363455 dipeptide ABC transporter (ATP-binding protein) COG0444  
dppE dciAE + 1363458..1365107 dipeptide ABC transporter (dipeptide-binding protein) COG4166  

Operon evidence: Northern blotting (5.9 kb transcript)
Reference: Mathiopoulos C, et al. (1991), Yoshida K, et al. (2003)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative -16:+18 1359656..1359689 TTTAATATAATTTGTTAGAATATTCATAATTTAG Slack FJ, et al. (1991): FT DB
CodY Negative -7:+31 1359665..1359702 ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA Serror P, et al. (1996): GS FT
SigA Promoter -46:+19 1359626..1359690 TTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT Slack FJ, et al. (1991): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GGAAATACTGCTTCTTTATGCGAAGGAGCGGTATTTTTCCTCTTTCTT
     >>>>>>>>>>>>    <<<<<<<<<<<<
1365126..1365153
19..46
-17.3
dppE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai