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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | gabP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| gabP | nrg-21 | - | 684703..686112 | gamma-aminobutyrate (GABA) permease | COG1113 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Ferson AE, et al. (1996), Genbank U51115 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CodY | Negative | ND | ND | ND |
Ferson AE, et al. (1996): DB DP |
| SigA | Promoter | -40:+9 | 686148..686196 | AATTTTCGACAAACTGTATATTTATGATAGAGTTTCAATTATCATAATA |
Ferson AE, et al. (1996): PE HM |
| SigA | Promoter | -42:+8 | 686137..686186 | AAACTGTATATTTATGATAGAGTTTCAATTATCATAATATTCAGTAATGA |
Ferson AE, et al. (1996): PE HM |
| TnrA | Positive | -60:-44 | 686199..686215 | TGGTATATTTTCTTACA |
Ferson AE, et al. (1996): DB DP |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TCAAATCCTAAACGGCCTGCCGTTTAGGATTTTGTTATTTTCTT >>>>>>>>>> <<<<<<<<<< |
gabP |
|