Regulated Operon: glcU-gdh

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
glcU ycxE + 444029..444892
COG4975 x0378-BAC  
gdh
+ 444912..445697 glucose 1-dehydrogenase COG1028 gdH-BAC  

Operon evidence: 5' primer extension analysis of gdh; genes downstream of gdh are on the opposite strand; Northern blotting (1.6 kb transcript)
Reference: Rather PN & Moran CP Jr (1988), Lampel KA, et al. (1986), Nakatani Y, et al. (1989), BSORF, Uratani B, Lampel KA, Lipsky RH, Freese E: Molecular Biology of Microbial Differentiation, edited by J.A. Hoch & P. Setlow, American Society for Microbiology, pp. 71-76 (1985)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigG Promoter -40:+7 443958..444004 TTCCGGCGAATAATCACAACAATTCCAGCCAAAATAACAGCAAATAC Rather PN & Moran CP Jr (1988): PE, promoter mutation
SpoVT Negative ND ND ND Bagyan I, et al. (1996): DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCGACCCAGACATGACATCTGGATCGCTTTCTTTATTAGGCA
     >>>>>>>>>>       <<<<<<<<<<
445707..445733
10..36
-14.3
gdh

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai