Regulated Operon: hag

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
hag
- 3634017..3634931 flagellin protein COG1344  

Operon evidence: Northern blotting (1.0 kb transcript)
Reference: Mirel DB & Chamberlin MJ (1989), Horsburgh MJ, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CodY Negative +70:+129 3634895..3634954 CATATTCAGGGAGGAACAAAACAATGAGAATTAACCACAATATTGCAGCGCTTAACACAC Bergara F, et al. (2003): DB RG GS FT
SigD Promoter -40:+6 3635018..3635063 TTTTGTATTAACAAAATCAGAGACAATCCGATATTAATGATGTAGC Mirel DB & Chamberlin MJ (1989): PE DB NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGACCTTGGCGTTGCCAGGGTCTTTTAATTTAAATTT
     >>>>>>>>>   <<<<<<<<<
3633986..3634006
11..31
-16.9
hag

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai