Regulated Operon: lexA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
lexA dinR - 1916848..1917465 transcriptional regulator COG1974 lexA-BAC lexA-CLO lexA-LAB lexA-STA  

Operon evidence: upstream and downstream genes are on the opposite strand
Reference: Raymond-Denise A & Guillen N (1991)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
LexA Negative -44:-21 1917519..1917542 TTTTTCGAACCTATGTTTGTACTG Raymond-Denise A & Guillen N (1991): DB RG
Haijema BJ, et al. (1996): DB RG DP GS
Winterling KW, et al. (1998): GS FT
Au N, et al. (2005): GS AR DB
LexA Negative -72:-49 1917548..1917571 ATATACGAACAAACGTTTCTGTCA Raymond-Denise A & Guillen N (1991): DB RG
Haijema BJ, et al. (1996): DB RG DP GS
Winterling KW, et al. (1998): GS FT
Au N, et al. (2005): GS AR DB
LexA Negative -109:-86 1917585..1917608 CAACAGGAATGTTTGTTCGCATTT Raymond-Denise A & Guillen N (1991): DB RG
Haijema BJ, et al. (1996): DB RG DP GS
Winterling KW, et al. (1998): GS FT
Au N, et al. (2005): GS AR DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AATAACCCCCTCTTCCTTTACGGAGAGGGGGTTTGTTGTTCAAAAA
     >>>>>>>>>>>     <<<<<<<<<<
1916793..1916818
30..55
-19.9
lexA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai