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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | narGHJI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| narG | - | 3825282..3828968 | nitrate reductase (alpha subunit) | COG5013 | narG-BAC | |
| narH | - | 3823829..3825292 | nitrate reductase (beta subunit) | COG1140 | ||
| narJ | - | 3823249..3823803 | nitrate reductase (protein J) | COG2180 | narJ-BAC | |
| narI | - | 3822581..3823252 | nitrate reductase (gamma subunit) | COG2181 | narI-BAC |
| Operon evidence: | Northern blotting (6.4 kb transcript) |
|---|---|
| Reference: | Cruz Ramos H, et al. (1995), Reents H, et al. (2006), Genbank Z49884 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| FNR | Positive | -53:-24 | 3829024..3829053 | AGTGTGTGACATAGTTCACAAGGAAACACG |
Cruz Ramos H, et al. (1995): DB PE Reents H, et al. (2006): DB NB AR RG SDM |
| SigA | Promoter | -53:+14 | 3828987..3829053 | AGTGTGTGACATAGTTCACAAGGAAACACGCTGTCTCTGTTTATAGTGAACTTAGCATCACCTGACT |
Cruz Ramos H, et al. (1995): PE Reents H, et al. (2006): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAATCCCCCTTGCAAGAGGGGGTTTTTTCTGCCAAGG >>>>>>> <<<<<<< |
narI |
|