Regulated Operon: ohrB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ykzA yzzE, ohrB + 1381326..1381736
COG1764  

Operon evidence: Northern blotting (0.5 kb transcript)
Reference: Volker U, et al. (1998)
Comments: readthrough at this terminator leads to 0.8 kb and 1.4 kb transcripts


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -51:+5 1381249..1381304 CTCGGCAAACATAGCATGTTTAAAAAGATCAGAAAGGGAAATATAACAACTAGATA Volker U, et al. (1998): PE HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ACCGGCATCCTGAGGATTCTCAGGATGTTTTTTGGTGTCGGA
     >>>>>>>>>    <<<<<<<<<
1381744..1381765
8..29
-15.1
ykzA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai