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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | opuAABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| opuAA | + | 320565..321821 | glycine betaine ABC transporter (ATP-binding protein) | COG4175 | opuAA-BAC-1 opuAA-BAC-2 | |
| opuAB | + | 321823..322671 | glycine betaine ABC transporter (permease) | COG4176 | ||
| opuAC | + | 322671..323552 | glycine betaine ABC transporter (glycine betaine-binding protein) | COG2113 | x0189-BAC |
| Operon evidence: | Northern blotting (3.0 kb transcript); genes further upstream or downstream are on the opposite strand |
|---|---|
| Reference: | Kempf B & Bremer E (1995), BSORF |
| Comments: | Northern blotting results in BSORF also show a shorter transcript at opuAC, but too short to represent a monocistronic transcript of the opuAC gene. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -43:+5 | 320461..320508 | GATGTTTATAAAGAAATGGTACAGAATAAAAGAGAATATGCTGTTTGT |
Kemph B & Bremer E (1995): PE |
| SigA | Promoter | -47:+5 | 320495..320546 | AATATGCTGTTTGTGTGGGAAGTTACATAAATGTTACGGTAATAAAGATTGC |
Kemph B & Bremer E (1995): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCAGCCTGTGTCAGGCTGCTTTTTTTGCGTTAAG >>>>>>>> <<<<<<<< |
opuAC |
|