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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | opuBABCD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| opuBA | proV | - | 3461136..3462281 | choline ABC transporter (ATP-binding protein) | COG1125 | opuCA-BAC |
| opuBB | proW | - | 3460466..3461119 | choline ABC transporter (membrane protein) | COG1174 | opuCB-BAC |
| opuBC | proX | - | 3459534..3460454 | choline ABC transporter (choline-binding protein) | COG1732 | opuCC-BAC |
| opuBD | proZ | - | 3458837..3459517 | choline ABC transporter (membrane protein) | COG1174 | opuCD-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Kappes RM, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -42:+13 | 3462338..3462392 | GTAAACTTTTTATTTTATAAACTTTATTCTATAATGGGAAGCATTCAATTGTCTG |
Kappes RM, et al. (1999): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGAGGCTGGAGTCCAGCCTCTTTTTTCTCTTTAAA >>>>>>>> <<<<<<<< |
opuBD |
|