Regulated Operon: pcrBA-ligA-yerH

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
pcrB yerE + 717961..718647 PcrB homolog COG1646 x1013-BAC  
pcrA yerF + 718709..720928 ATP-dependent DNA helicase COG0210 pcrA-BAC pcrA-STR  
ligA lig, yerG + 720952..722958 DNA ligase COG0272 ligA-BAC ligA-BAC  
yerH
+ 722974..724164
COG4851  

Operon evidence: Genome analysis
Reference: Petit MA, et al. (1998)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
LexA Negative ND 718669..718692 ATGATAGAACGTATGTTTTGTATA Au N, et al. (2005): GS AR DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATGACTGATAGAAAACCCTTGTGCCATATTGGCACAAGGGTTTTTATGTTACAAT
               >>>>>>>>>>>   <<<<<<<<<<<
724172..724196
8..32
-22.1
yerH

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai