Regulated Operon: pel

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
pel
+ 827330..828592 pectate lyase COG3866  

Operon evidence: Northern blotting (1.3 kb transcript)
Reference: Nasser W, et al. (1993), Yoshida K, et al. (2003)
Comments: Northern blotting results in BSORF also show a pel-yflS trancript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive ND 827206..827221 TTGCAGAATGCCGCAA Comella N & Grossman AD (2005): DB AR OV RG
TnrA Negative ND 827287..827303 TGGAATAAAATCTCACA Yoshida K, et al. (2003): AR HM GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACACAAAGGGTGCTAACCTTTGTGTTTTTTAATTAATTA
     >>>>>>>>       <<<<<<<<
828605..828627
13..35
-12.4
pel

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai