Regulated Operon: rapA-phrA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapA gsiAA, spo0L + 1315179..1316315 response regulator aspartate phosphatase COG0457  
phrA gsiAB + 1316305..1316439 inhibitor of the activity of phosphatase RapA
 

Operon evidence: hybrid formation with RNA probes; nuclease protection experiments
Reference: Mueller JP, et al. (1992), Genbank AF034138
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive -75:-36 1315073..1315112 TTGCGGTTAGCCGAAATTCGACAATTGCGGTTATTTTGCG Mueller JP, et al. (1992): DP RO DB
SigA Promoter -50:+19 1315098..1315166 TGCGGTTATTTTGCGTTCTTCTTTTTCTTGTAAATATGATAAAATATGACATATCTCGGGTAATTCAAA Mueller JP, et al. (1992): PE
Jarmer H, et al. (2001): PE SDM HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGACCCTTAGGGGTCTTTTTTATTTCTTCA
     >>>>>    <<<<<
1316452..1316465
13..26
-8.9
phrA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai