Regulated Operon: rapF-phrF

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapF ywhJ + 3845024..3846169 response regulator aspartate phosphatase COG0457  
phrF ywhI + 3846153..3846272 regulator of the activity of phosphatase RapF
 

Operon evidence: Primer extension of phrF; genome analysis
Reference: McQuade RS, et al. (2001), Genbank Z80360
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive ND ND ND Bongiorni C, et al. (2005): RG DB
SigH Promoter -36:+5 3846030..3846070 TTGAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAA McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TTTAACCGCCGTCCATCGGCGGTTTTTTCGTCCCCTC
     >>>>>>     <<<<<<
3846273..3846289
1..17
-12.0
phrF

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai