Regulated Operon: rapH-phrH

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapH yeeH, yzqA + 750293..751588 response regulator aspartate phosphatase COG0457  

Operon evidence: Northern blotting; genome analysis
Reference: Hayashi K, et al. (2006)
Comments: Sequencing errors resulted in an apparent monocistronic rapH gene, without the associated phrH (Hayashi et al., 2006).

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive -75:-42 750187..750220 AAAAAACAAATTGACAGGATGAAAAAACAATTTC Ogura M, et al. (2002): AR RG HM DB
Hayashi K, et al. (2006): RG DB
YvaN Negative -149:-120 750113..750142 TGTGGTTGACAATAAGTGAATACTATATGA Hayashi K, et al. (2006): RG DB AR PE GS FT SDM
YvaN Negative -76:-46 750186..750216 AAAAAAACAAATTGACAGGATGAAAAAACAA Hayashi K, et al. (2006): RG DB AR PE GS FT SDM
SigA Promoter -42:+4 750220..750265 CTTCCTTCTATATTGTTTTCAAAATTTGGGATTGATAGAATATGAC Hayashi K, et al. (2006): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AGAAAGCCCTTAGCTAGGGCTTTTTCTTGCTTTAC
     >>>>>     <<<<<
751577..751591
-11..3
-8.8
 rapH

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai