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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rocR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rocR | + | 4144771..4146156 | transcriptional regulator (NtrC/NifA family) | COG3829 | rocR-BAC |
| Operon evidence: | Northern blotting; upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| RocR | Negative | -50:-30 | 4144687..4144707 | AGTGCAAAATTCTTTTGCATA |
Gardan R, et al. (1995): DB PE RG |
| SigA | Promoter | -45:+4 | 4144692..4144740 | AAAATTCTTTTGCATATCCTCTCCGTTTTTTTATAAAATAGAAGCAATA |
Gardan R, et al. (1995): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTCAACTGAACGGGCGTGACCCCTGTTCAGTTTTTTTTGCATATC >>>>>>>>> <<<<<<<<< |
rocR |
|