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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sdpRI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yvbA | sdpR | - | 3466085..3466357 | COG0640 | x0133-BAC | |
| yvaZ | sdpI | - | 3465465..3466088 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Gonzalez-Pastor JE, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | ND | ND | ND |
Ellermeier CD, et al. (2006): DB RG |
| SigA | Promoter | -37:+8 | 3466408..3466452 | GGGTTGTTTTTAAAAAAATTCAAGTTATAATGAAAATAATACATT |
Ellermeier CD, et al. (2006): PE |
| YvbA | Negative | -37:+39 | 3466377..3466452 | GGGTTGTTTTTAAAAAAATTCAAGTTATAATGAAAATAATACATTTATACAAATATCTAAATGTCTAAATGTTTTT |
Gonzalez-Pastor JE, et al. (2003): RG Ellermeier CD, et al. (2006): RG DB GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CACGTTGAAAAAGTGTCTTGCGGAGCAATCCGCAAGACACTCAATTATAATGGATTATT >>>>>>>>>>>>> <<<<<<<<<<<<< |
yvaZ |
|