Regulated Operon: spoIVA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
spoIVA spoVP - 2385392..2386870

spoIVA-BAC  

Operon evidence: Northern blotting (1.6 kb transcript)
Reference: Roels S, et al. (1992), Stevens CM, et al. (1992)
Comments: Significance of the second stem-loop is unknown.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -40:+4 2386932..2386975 GATGTCATATTCAAATAGGACAACGTCATACACATATAGTGTCC Roels S, et al. (1992): NB RG DB OV PE
SigE Promoter -38:+4 2387019..2387060 AAAGGAATGAACCTTTCTCCCTTGCATACAAATAGGGAGAAA Roels S, et al. (1992): NB RG DB OV PE
SpoIIID Negative ND ND ND Eichenberger P, et al. (2004): GS AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CGGTAGACCTCTTTATAGAATGGGAGGTCTTTTTTCTTTGCTCT
     >>>>>>>>        <<<<<<<<
2385360..2385383
9..32
-12.2
 spoIVA
GAAATTCTTCACTTTGTTGGACAAACATTCCTCAGAGTGCAGTTTTTCTTAAAAAGC
      >>>>>>>>>>>>>>>       <<<<<<<<<<<<<<
2385157..2385192
200..235
-13.9
 spoIVA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai