Regulated Operon: spoIVCA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
spoIVCA cisA - 2652597..2654099 site-specific DNA recombinase COG1961  

Operon evidence: Genome analysis
Reference: Sato T, et al. (1990)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -44:+6 2654205..2654254 AAAATCTCCTCATTTGGACAAACAGCTGTTACATAGCATTACCCAAGGGG Sato T, et al. (1994): PE S1
SpoIIID Positive -47:-12 2654223..2654256 TTAAAATCTCCTCATTTGGACAAACAGCTGTTAC Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR
SpoIIID Positive +137:+154 2654057..2654074 CGACCGAGGAACAAGCGA Halberg R, et al. (1994): FT RO
Eichenberger P, et al. (2004): GS AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAAT
     >>>>>>    <<<<<<
2652578..2652593
4..19
-11.8
spoIVCA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai