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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | tagDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| tagD | - | 3679611..3680000 | glycerol-3-phosphate cytidylyltransferase | COG0615 | tagD-STA | |
| tagE | rodD, gtaA, gtaD | - | 3677429..3679450 | UDP-glucose:polyglycerol phosphate glucosyltransferase | COG0438 | |
| tagF | rodC | - | 3675189..3677429 | CDP-glycerol:polyglycerol phosphate glycero-phosphotransferase | COG1887 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Honeyman AL & Stewart GC (1989), Rosenberg M & Court D (1979) |
| Comments: | Honeyman & Stewart propose that the ATTTTATAAAAT inverted repeat in front of the terminator hairpin functions to slow the RNA polymerase prior to transcription termination. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PhoP | Negative | -81:-12 | 3680144..3680204 | GTCTGAGTGTAATTACATATTTTGGAATGTTTTTCTCCTCATGAGTACTTAACCTTTTTTA |
Liu W, et al. (1998): DB FT |
| PhoP | Negative | +122:+168 | 3679954..3680000 | ATGAAAAAAGTTATCACATATGGAACTTTTGATTTACTGCATTGGGG |
Liu W, et al. (1998): DB FT |
| PhoP | Negative | +79:+106 | 3680016..3680043 | TGTTTTTAATAGTGTTTAACATTAGGAA |
Liu W, et al. (1998): DB FT |
| SigA | Promoter | -40:+6 | 3680116..3680161 | AGTACTTAACCTTTTTTAGGCGGTATGCTATAATTAATGATCAGTG |
Mauel C, et al. (1995): PE |
| YycF | Positive | -177:-147 | 3680268..3680298 | CAAAGGATTAACATTATCTTTACATTAAATT |
Howell A, et al. (2003): HM FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TGTATAGCTGTCGATTTTTCGGCAGCTTTTTAGATACTTGTT >>>>>>>>> <<<<<<<<< |
tagF |
|