Regulated Operon: tlpA-mcpA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
tlpA
- 3207319..3209307 methyl-accepting chemotaxis protein COG0840 mcpA-BAC-2  
mcpA
- 3205208..3207193 methyl-accepting chemotaxis protein COG0840 mcpA-BAC-1 mcpA-BAC-2 mcpA-BAC-3 x0462-BAC  

Operon evidence: Genome analysis
Reference: Hanlon DW & Ordal GW (1994)
Comments: internal promoter suspected (but not shown experimentally) in front of mcpA


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigD Promoter ND 3209328..3209376 TTTCAATGTAATTTAAAGGAAGATCCGCCGATATAATTTGTAAATTATT Hanlon DW & Ordal GW (1994): HM
SigD Promoter ND 3207209..3207260 TTTTGCTGTATATATTTACCCATTTCCAGCCGATATGAAGGGTAGCATAAAA Hanlon DW & Ordal GW (1994): HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTTAACACCCAAGCTTGTTGCGCTTGGGTGTTTTTTTTAGTTTTT
     >>>>>>>>>       <<<<<<<<<
3205173..3205197
11..35
-17.6
mcpA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai