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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yabMNOPQ-divIC-yabR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yabM | + | 64815..66413 | COG2244 | |||
| yabN | + | 66403..67872 | COG3956 | |||
| yabO | + | 67875..68135 | COG1188 | |||
| yabP | spoVUA | + | 68214..68516 | yabP-BAC | ||
| yabQ | spoVUB | + | 68513..69148 | |||
| divIC | + | 69166..69543 | cell-division initiation protein | COG2919 | ||
| yabR | + | 69624..70010 | COG1098 | yabR-BAC |
| Operon evidence: | Northern blotting (5.3 kb transcript) |
|---|---|
| Reference: | Asai K, et al. (2001) |
| Comments: | Internal promoters in front of yabN (3.7 kb trancript), yabP (1.9 kb transcript), divIC (1.0 kb transcript), and yabR (0.5 kb transcript) |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -39:+6 | 68137..68181 | CTTGTTCTAAAAAAACCCCCCACCTCATACAATGCAGTAATAATG |
Asai K, et al. (2001): NB DB PE |
| SpoIIID | Negative | ND | ND | ND |
Eichenberger P, et al. (2004): GS AR |
| SigW | Promoter | -36:+6 | 69016..69057 | TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG |
Huang X, et al. (1998): RO Cao M, et al. (2002): AR |
| SigX | Promoter | -36:+6 | 69016..69057 | TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG |
Huang X & Helmann JD (1998): PE RG DB Huang X, et al. (1998): RO Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGAAGCATCCGTTCATCCCGACGGATGCTTTTTTATTATCCTC >>>>>>>>> <<<<<<<<< |
yabR |
|