Regulated Operon: yccC

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yccC ansZ + 290467..291594
COG0252  

Operon evidence: Genome analysis; upstream gene is on the opposite strand; the downstream lip gene was shown to be monocistronic in a Northern blotting experiment
Reference: Fisher SH & Wray LV Jr (2002)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -40:+6 290400..290445 GATCTTTTGACTGAATAGATAAAATGTACAATGATTAATCATCATA Fisher SH & Wray LV Jr (2002): PE
TnrA Positive -60:-37 290380..290403 TACTGAGAGAAAAGCTGACTGATC Fisher SH & Wray LV Jr (2002): FT GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAAAGAAGGCGAATAAGCCTTCTTTTTTTTGGCTTTT
     >>>>>>      <<<<<<
291601..291618
7..24
-11.0
yccC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai