Regulated Operon: ycgFG

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ycgF
+ 334192..334821
COG1280  
ycgG
+ 334891..335652
COG3403  

Operon evidence: downstream gene ycgH is in the opposite direction; no experimental evidence that ycgF and ycgG are in the same operon
Reference: Eichenberger P, et al. (2003)
Comments: Northern blotting results in BSORF show a ycgEFG and a ycgG transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -37:+9 334125..334170 TTGTGCATAGCTTGGCCCGTTCCCGAATAAATTGTACAAGTTACAT Eichenberger P, et al. (2003): AR, 5'-RACE-PCR
SpoIIID Negative ND ND ND Eichenberger P, et al. (2004): GS AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTGGCAGGGCGATCTTTGTGACCCTACTTTTTTTGATAGATC
     >>>>>>       <<<<<<<
335666..335685
14..33
-7.9
ycgG

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai