Regulated Operon: ydbST

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ydbS
+ 512375..512854
COG3402 ydbS-BAC  
ydbT
+ 512844..514325
COG3428  

Operon evidence: downstream gene is on the opposite strand
Reference: Cao M, et al. (2002), Genbank AB001488
Comments: No experimental evidence that ydbS and ydbT belong to the same operon; Genbank AB001488 does not list a terminator after ydbT


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigW Promoter -38:+5 512310..512352 AAGAATGAAACCTTTCTGTAAAAGAGACGTATAAATAACGACG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TCTGAAGCGGCGGTTAATACCGCCGCTCTTTTTTTTGCACGCA
     >>>>>>>>>    <<<<<<<<<
514569..514590
244..265
-19.1
ydbT

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai