Regulated Operon: ydcA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ydcA
- 514577..515176
COG0705  

Operon evidence: upstream and downstream genes are transcribed in the opposite direction
Reference: Eichenberger P, et al. (2003), Genbank AB001488
Comments: No terminator listed in Genbank AB001488


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -40:+7 515204..515250 TACGTACTATTTAAATGGTTTGTCTCATAAACGTGTTACTATAGATA Eichenberger P, et al. (2003): AR, 5'-RACE-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAAATCCTAAAATGGTTTTCATTTTAGGATTTTGTCATCTTTTC
     >>>>>>>>>>>   <<<<<<<<<<<
514527..514551
26..50
-13.8
ydcA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai