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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yfmPO |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yfmP | + | 811477..811899 | COG0789 | |||
| yfmO | + | 811965..813155 | COG0477 |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | Gaballa A, et al. (2003), Genbank D86418 |
| Comments: | Northern blotting results in BSORF show a yfmP, a yfmO, and a yfmPO transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -41:+5 | 811412..811457 | TTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGAAA |
Gaballa A, et al. (2002): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGAAAGACACTGCGCATATGCAGTGTCTTTTTATTCGTTATA >>>>>>>> <<<<<<<< |
yfmO | |||
| TTAAACGCTATTTTTGTAGCGTTTCTTTTAATGGAA >>>>>> <<<<<< |
yfmP |
|