Regulated Operon: yhaG

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yhaG trpP - 1073951..1074469

 

Operon evidence: Genome analysis
Reference: Sarsero JP, et al. (2000)
Comments: Binding of the mtrB product (TRAP) causes translational attenuation of yhaG.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -42:+19 1074533..1074593 AAAGTCTGGCTATGCAAACCGTCCGTTTGGTATACTGTTTGCATAACACATTCTGTAAAGC Sarsero JP, et al. (2000): PE
MtrB Negative ND 1074448..1074522 AATGATGAGCATATTATTGGAGGGCAAAAAGCTTAGCAGAGGAGAGCATAGTTATGAAAACAAAAGAGTTAGTCA Sarsero JP, et al. (2000): DB RG, RNA dot blot analysis
Yakhnin H, et al. (2004): RG DB GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAAACCTCTTCCGCTTCCGGGAGAGGTTTTTTTGAACAGAG
     >>>>>>>>>    <<<<<<<<<
1073916..1073937
14..35
-14.6
yhaG

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai