Regulated Operon: yhfL

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yhfL
+ 1100284..1101825
COG0318 x0851-BAC  

Operon evidence: Northern blotting (1.7 kb transcript)
Reference: Matsuoka H, et al. (2006)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YsiA Negative -38:+44 1100192..1100273 GCTCTTGAGTGTTTTTTTCTGTTTCTCTATAATGGAGAAGAAAGCTTGGCTTCAATAATGAATGACTATTCATTCACTTAAG Matsuoka H, et al. (2006): NB DB PE GS FT RG
SigA Promoter -38:+44 1100192..1100273 GCTCTTGAGTGTTTTTTTCTGTTTCTCTATAATGGAGAAGAAAGCTTGGCTTCAATAATGAATGACTATTCATTCACTTAAG Matsuoka H, et al. (2006): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AATAAAATGAAAAAGCGAAGCGGTTAGCTTCGCTTTTTCATTTTCAAT
              >>>>>>>     <<<<<<<
1101835..1101853
10..28
-14.1
yhfL

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai