Regulated Operon: yjbCD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yjbC
+ 1226251..1226829

 
yjbD spx, spxA + 1227010..1227405
COG1393 x0334-BAC-2 x0510-STR  

Operon evidence: Northern blotting (1.2 kb transcript)
Reference: Antelmann H, et al. (2000)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -42:+6 1226177..1226224 TAAGGCTGTTTAAACAAGAAGAAATGGGGTATATCTAAAAGTATGAAG Petersohn A, et al. (1999): PE HB
Antelmann H, et al. (2000): PE NB
SigW Promoter -40:+4 1226135..1226178 AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA Antelmann H, et al. (2000): PE NB
Cao M, et al. (2002): HM RO RG DB
Cao M, et al. (2002): AR
unknown Promoter -39:+6 1226103..1226148 GAACGGAGCAGCTGGCTCCGTTTTGCTGAAAAAAAAATGAAACCAT Antelmann H, et al. (2000): PE NB
SigX Promoter -40:+4 1226135..1226178 AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA Antelmann H, et al. (2000): PE NB
Cao M, et al. (2002): HM RO RG DB
Cao M, et al. (2002): AR
PerR Negative -40:+40 1226892..1226971 GATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCTTTTTTAGAGTAATTTCAATTTAAGAATAAA Leelakriangsak M, et al. (2007): FT
SigA Promoter -50:+10 1226883..1226941 TTTTCTTAGGATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCT Leelakriangsak M, et al. (2007): PE
SigM Promoter -50:+10 1226837..1226896 TAAGAACATATCATGAACATTAAAAATTTGCTGGATTGACACATTTTTTTCTTAGGATAC Leelakriangsak M, et al. (2007): ND
Thackray PD, et al. (2003): RG
YodB Negative -40:+10 1226892..1226941 GATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCT Leelakriangsak M, et al. (2007): FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CAAAAGAAGGCTGAGTCATCAGCCTTCTTTTATTTTTCAACC
     >>>>>>>>>    <<<<<<<<<
1227424..1227445
19..40
-16.8
 yjbD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai