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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ykvUV |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ykvU | + | 1448558..1449895 | COG2244 | |||
| ykvV | spoIVH, stoA | + | 1449946..1450443 | COG0526 |
| Operon evidence: | Northern blotting (2.0 kb transcript) |
|---|---|
| Reference: | Imamura D, et al. (2004) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -39:+8 | 1448494..1448540 | AATAAAATAATTTTTGAACTTGTCTCATATGATGTTGGTAGTACAAG |
Eichenberger P, et al. (2003): AR, 5'-RACE-PCR |
| SpoIIID | Negative | ND | ND | ND |
Eichenberger P, et al. (2004): GS AR |
| SigG | Promoter | -33:+9 | 1449888..1449929 | AAGGATGATAAAGGAACAGCAGGGGCAAGCTAATTGAAAAGC |
Imamura D, et al. (2004): NB PE RG, immunoblot analysis |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAATAGCTGAGAGCATAGACTCTCAGCTTTTTTCATATAGAG >>>>>>>> <<<<<<<< |
ykvV |
|