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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ylxS-nusA-ylxRQ-infB-ylxP-rbfA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ylxS | ymxA | + | 1731068..1731538 | COG0779 | ylxS-BAC | |
| nusA | + | 1731573..1732688 | COG0195 | nusA-BAC nusA-CLO nusA-LAB nusA-STA nusA-STR | ||
| ylxR | ymxB | + | 1732702..1732977 | COG2740 | ylxR-BAC ylxR-STR | |
| ylxQ | ymxC | + | 1732979..1733281 | COG1358 | ||
| infB | + | 1733301..1735451 | initiation factor IF-2 | COG0532 | infB-BAC infB-STR | |
| ylxP | ymxD | + | 1735448..1735726 | COG1550 | ||
| rbfA | ymxE, ylxO | + | 1735743..1736096 | ribosome-binding factor A | COG0858 | rbfA-BAC rbfA-STA x1021-STR |
| Operon evidence: | Northern blotting (5.2 kb transcript) |
|---|---|
| Reference: | Shazand K, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -46:+18 | 1730845..1730908 | GCGTATATCCATTTGCAATAAAAATATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA |
Shazand K, et al. (1993): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAGAGAGGATAGGCGTATATCGTCTGTCCTCTTTCTTCGTTTATAA >>>>>>>>>>> <<<<<<<<<<< |
rbfA |
|