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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ytrABCDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ytrA | - | 3117896..3118288 | COG1725 | |||
| ytrB | - | 3117025..3117903 | COG1131 | |||
| ytrC | - | 3116045..3117031 | ||||
| ytrD | - | 3115038..3116015 | ||||
| ytrE | - | 3114328..3115023 | COG1136 | |||
| ytrF | - | 3113028..3114338 | COG0577 |
| Operon evidence: | Northern blotting (5.5 kb transcript) |
|---|---|
| Reference: | Yoshida KI, et al. (2000), Lapidus A, et al. (1997), Genbank AF008220 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -41:+6 | 3118527..3118573 | AAAGGATTGACTTTGTGAGTCAAAGTATTTATTGTATTAAGTGTACT |
Yoshida KI, et al. (2000): NB PE |
| YtrA | Negative | ND | ND | ND |
Yoshida KI, et al. (2000): RG NB PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACGAGCCGGCTGAGACAGCCGGCTTTTTCTATAGCGCA >>>>>>>> <<<<<<<< |
ytrF |
|