Regulated Operon: yvyD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yvyD yviI - 3630033..3630602
COG1544  

Operon evidence: Northern blotting (0.6 kb transcript)
Reference: Drzewiecki K, et al. (1998), Chen L & Helmann JD (1994)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -42:+7 3630632..3630680 GATTTATGTTTCAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACA Drzewiecki K, et al. (1998): PE NB DB
Eymann C & Hecker M (2001): PE
SigH Promoter -39:+5 3630626..3630669 CAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACATATCCT Drzewiecki K, et al. (1998): PE NB DB
Eymann C, et al. (2001): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AGAAGCCTTCCGTGATGTCCGCGGAAGGTTTTTGTTTTTCTTA
     >>>>>>>>>     <<<<<<<<<
3630000..3630022
11..33
-15.7
yvyD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai