Regulated Operon: ywbI-thiME

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ywbI ipa-24d - 3931221..3932126
COG0583  
thiM thiK, ipa-25d, ywbJ - 3930395..3931213 hydroxyethylthiazole kinase COG2145  
thiE thiC, ipa-26d, ywbK - 3929730..3930398 thiamine-phosphate pyrophosphorylase COG0352 thiC-BAC  

Operon evidence: Northern blotting (2.4 kb transcript)
Reference: Zhang Y, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -40:+9 3932165..3932213 TACTTATTGTACATAAGGTCTCTCTATAGGTAAAATATATATTAAGAAT Zhang Y, et al. (1997): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAGGGCTGTTCTGTAAAAGGACAGCTTTTTTGCTGTCCAT
     >>>>>>>>     <<<<<<<<
3929688..3929708
22..42
-12.8
thiE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai