Regulated Operon: ywkAB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ywkA maeA - 3799441..3801189
COG0281  
ywkB
- 3798400..3799359
COG0679  

Operon evidence: Northern blotting (2.8 kb transcript); genes further downstream are on the opposite strand
Reference: Doan T, et al. (2003), Genbank Z49782
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -49:+11 3801258..3801317 GTAATTTTCTTCTCTTGAATTTTGATTTTGACAGGCATACAATAGCTTACGTAATGTAAA Doan T, et al. (2003): PE
YufM Positive -88:-30 3801298..3801360 AATATTCAATTAAAAAATTTAAATAAGTATATTAAAAAATTAAGTAATTTTCTTCTCTTGAAT Doan T, et al. (2003): NB PE RG FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCTCCCTTTAAGGGAGCTTTTTGCTTTAGGTT
     >>>>>>>   <<<<<<<
3798375..3798391
9..25
-13.2
ywkB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai