Regulated Operon: ywmF-csbD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ywmF
- 3769388..3769867

 
csbD ywmG - 3769127..3769315 sigma-B-controlled gene COG3237 csbD-STA  

Operon evidence: Genome analysis
Reference: Wray LV Jr, et al. (1997), Akbar S, et al. (1999)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter ND 3769337..3769390 TAACATTAGAATGTTTATTGCCTCTCAGATCGGGAAGTTAACAAGTACACACAT Akbar S, et al. (1999): RG; binding site mutation

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAGAGGCAGGAAACGAAATGTTTCTTGTCTTTTTTTTTCGCTTT
     >>>>>>>>>>     <<<<<<<<<<
3769090..3769114
13..37
-14.6
csbD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai