Regulated Operon: ywnJ

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ywnJ
- 3758191..3758613

 

Operon evidence: Genome analysis
Reference: Cao M & Helmann JD (2002), Presecan E, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigF Promoter -34:+6 3758695..3758734 AACAGTCTTAATGAAGAAAACGTCTATCCTTGTGATGGGC Wang S, et al. (2006): AR, Race-PCR
SigW Promoter -44:+9 3758641..3758693 TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG Cao M, et al. (2002): AR
Cao M & Helmann JD (2004): RO PE
SigX Promoter -44:+9 3758641..3758693 TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG Cao M & Helmann JD (2004): ROMA RG PE
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TTAAAGCCGGCTGTCTTGATTTCAGACGCCGGCTTTTGTCTTTCTTAG
     >>>>>>>>>>>>>    <<<<<<<<<<<
3758162..3758189
2..29
-19.5
ywnJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai