Regulated Operon: yxbCD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yxbC yxaQ - 4094935..4095927
COG2850  
yxbD yxaR - 4094376..4094855
COG0454  

Operon evidence: Northern blotting (2.3 kb transcript); downstream gene is on the opposite strand
Reference: Yoshida K, et al. (2000)
Comments: A readthrough terminator may exist downstream of yxbC, leading to a 1.1 kb transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative ND ND ND Hamon MA, et al. (2004): AR RT-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAAAAGGCGCTCCTCTAAGGAAGCGCCTTTTGATCATGCGAT
     >>>>>>>>>   <<<<<<<<<<
4094352..4094373
3..24
-15.5
yxbD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai