Regulated Operon: yxkF-msmX

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yxkF
- 3984370..3985263
COG2508  
msmX yxkG - 3983152..3984249 multiple sugar-binding transport ATP-binding protein COG3839 msmX-BAC  

Operon evidence: Northern blotting (2.3 kb transcript)
Reference: Yoshida K, et al. (2000), BSORF
Comments: An internal promoter in front of msmX leads to a 1.3 kb transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative ND 3984265..3984287 TATAAGAAAGCGTTTACAATAAC Miwa Y, et al. (2000): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACCGGACATGGAGACATGTCCGGTTTTTTGCTATTGAA
     >>>>>>>>>    <<<<<<<<<
3983119..3983140
12..33
-19.7
msmX

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai