Transcription factor: GerE

Factor type	LuxR/UhpA
SWISS-PROT	P11470
SubtiList	BG10355
Consensus seq.	RWWTRGGY--YY
Comment	Positive(?) regulator which affects transcription of many genes in the mother cell during the late stages of sporulation
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
cgeAB	cgeA	SigK	Positive	`2147772..2147803`	`-72:-41`	AATAGATGAAAAATAGATCAGGTACGGCGTTC	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2147761..2147792`	`-83:-52`	CATTTTCCTTAAATAGATGAAAAATAGATCAG	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2147744..2147775`	`-100:-69`	CTCCATTAAAAAATCAGCATTTTCCTTAAATA	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2147718..2147749`	`-126:-95`	TCGATTTATGGTATAGGCTATGTCCACTCCAT	Roels S, et al. (1995): HB
cgeAB	cgeA	SigK	Positive	`2147696..2147727`	`-148:-117`	CTGTTTCACAATATGTGCGACTTCGATTTATG	Roels S, et al. (1995): HB
cgeCDE	cgeC	SigK	Positive	`2147791..2147822`	`-126:-95`	CTGTTATTTGGTATGAGTCGAACGCCGTACCT	Roels S, et al. (1995): HB
cotA	cotA	SigK	Negative	ND	ND	ND	Zheng L, et al. (1992): DB RO
cotB	cotB	SigK	Positive	`3715010..3715029`	`-81:-62`	GAAAATGGGTATTCGCGGAA	Zheng L, et al. (1992): GS FT RO
cotB	cotB	SigK	Positive	`3714989..3715009`	`-71:-41`	AAAGCGACAATTAGGCTATTG	Zheng L, et al. (1992): GS FT RO
cotC	cotC	SigK	Positive	`1904556..1904571`	`-141:-126`	CGTTTGGGCCGATGAA	Zheng L, et al. (1992): GS FT RO
cotC	cotC	SigK	Positive	`1904486..1904507`	`-77:-56`	ATCATTTGGACAGCCCTTTTTT	Zheng L, et al. (1992): GS FT RO
cotD	cotD	SigK	Pos/Neg	`2332271..2332302`	`-63:-32`	CACACTTTTAAAATAGGTCTTTGCATCAGAAC	Ichikawa H, et al. (1999): FT
cotD	cotD	SigK	Pos/Neg	`2332249..2332280`	`-41:-10`	GCATCAGAACATGTACCCCTTATTTTTCATAA	Ichikawa H, et al. (1999): FT
cotG	cotG	SigK	Positive	`3716134..3716165`	`-85:-54`	TCCTTACAAATTTTAGGCTTTTATTTTTATAA	Sacco M, et al. (1995): DB
cotH	cotH	SigK	Negative	`3716141..3716158`	`+66:+83`	AATAAAAGCCTAAAATTT	Baccigalupi L, et al. (2004): RG FT, binding site mutation
cotM	cotM	SigK	Negative	`1925286..1925309`	`-42:-19`	TTATGCGTTCACCCATTTATACTC	Henriques AO, et al. (1997): DB RG
ydgBA-cotP	ydgB	SigK	Negative	`602298..602321`	None	CAAGGAACAATTGGGTGCAGCGGC	Henriques AO, et al. (1997): DB RG
cotVWX	cotV	SigK	Positive	`1251385..1251406`	`-53:-32`	AAATTGGTTATTTTTATTATTC	Zhang J, et al. (1994): FT RO
cotVWX	cotX	SigK	Positive	`1250557..1250577`	`-70:-50`	TAAAAAATAGGGTTCTTCATC	Zhang J, et al. (1994): FT RO
cotVWX	cotX	SigK	Positive	`1250539..1250557`	`-50:-32`	CAGGATATATGACTCAGTC	Zhang J, et al. (1994): FT RO
cotYZ	cotY	SigK	Positive	`1249889..1249912`	`-57:-34`	TGAATATATAGACGTTCACCCACA	Zhang J, et al. (1994): FT RO
cotYZ	cotY	SigK	Positive	`1249888..1249904`	`-49:-33`	TAGACGTTCACCCACAC	Zhang J, et al. (1994): FT RO
cwlH	cwlH	SigK	Positive	`2649031..2649051`	`-160:-140`	CCCAACTTAGGTGATGTCAGG	Nugroho FA, et al. (1999): RG PE HM
rnc-smc-ftsY	ftsY	SigK	Positive	`1668639..1668670`	`-83:-62`	AAGAAGTCAAACTTGGACGAATGGAAGTCGAG	Kakeshita H, et al. (2000): PE NB
rnc-smc-ftsY	ftsY	SigK	Positive	`1668589..1668620`	`-143:-111`	GAAAGAAATGAAACGCCTGTATAAACAAAAAA	Kakeshita H, et al. (2000): PE NB
gerPABCDEF	gerPA	SigK	Negative	ND	ND	ND	Behravan J, et al. (2000): DB RG Eichenberger P, et al. (2004): DB AR
spoIVCB-spoIIIC	spoIVCB	SigE/SigK	Negative	`2652171..2652201`	`-9:+22`	ATACATTTACATATAGGCTTTTGCCTACATA	Zheng L, et al. (1992): RO Ichikawa H, et al. (1999): FT RG
spoIVCB-spoIIIC	spoIVCB	SigE/SigK	Negative	`2652179..2652210`	`-1:+31`	ACATATAGGCTTTTGCCTACATACTTTTGTGG	Zheng L, et al. (1992): RO Ichikawa H, et al. (1999): FT RG
sspG-yurS	sspG	SigK	Positive	`3352971..3353002`	`-99:-68`	TTACCAAATCAAATGCTTTCCTTCGACCTTTT	Bagyan I, et al. (1998): DB RG
sspG-yurS	sspG	SigK	Positive	`3353007..3353039`	`-63:-31`	TAATGTGGAAAAACCGCGAAGTTCGTCCAATCT	Bagyan I, et al. (1998): DB RG
yjcB-yjcZ-spoVIF	yjcZ	SigK	Positive	`1252319..1252364`	`-74:-29`	TATGATCAATCGTAAATCCGCAAACGCCCTATGCGAATATCCAAGC	Kuwana R, et al. (2003): NB DB HM
yoaN	yoaN	SigK	Negative	ND	ND	ND	Costa T, et al. (2004): NB SDS-PAGE RG, GFP localization