Transcription factor: SigK

Factor type ND
SWISS-PROT P12254
SubtiList BG10459
Consensus seq. (c/a)AC(c/a)(-35) - 16bp - CATA---TA(-10)
Comment sigK is formed by a site-specific recombination event which joins the previously separated spoIVCB and spoIIIC genes into a single cistron.
Link to Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon Regulated Gene Absolute position Location Binding seq.(cis-element) Experimental evidence
cgeAB cgeA 2147801..2147848 -43:+5 TTCGACTCATACCAAATAACAGCCGGAAGAATATGAATAACGTGAGTT Roels S, et al. (1995): PE NB DB
cgeCDE cgeC 2147692..2147739 -43:+5 CATAGCCTATACCATAAATCGAAGTCGCACATATTGTGAAACAGAGAT Roels S, et al. (1995): PE NB DB
cotA cotA 684581..684628 -42:+6 ATTTTTTGTAACCATCACGTCCTTATTGTCATTAACTATAGTACCAAT Sandman K, et al. (1988): RG DP S1
cotB cotB 3714945..3714991 -43:+4 TTGAATTAGTTCAACAAATAAATGTGACACGTATATATGCAGTATGT Zheng LB & Losick R (1990): PE
cotC cotC 1904425..1904471 -41:+6 AACTGTCCAAGCCGCAAAATCTACTCGCCGTATAATAAAGCGTAGTA Zheng L, et al. (1992): PE
Zheng LB & Losick R (1990): PE RG DP
cotD cotD 2332235..2332282 -43:+5 TTGCATCAGAACATGTACCCCTTATTTTTCATAACTTAGTATTGTAAT Zheng LB & Losick R (1990): S1 RG
cotE cotE 1774269..1774316 -43:+5 ATAAAAATGCACACTAGACAAATGCCCAGCATAAGATAACACGAAGAA Zheng LB & Losick R (1990): PE S1 RG DP
Eichenberger P, et al. (2004): GS
cotF cotF 4166063..4166107 -43:+2 AACATCATGAACAACATTGAGCGTTGGGCATATGCTGATATGGAA Cutting S, et al. (1991): PE
cotG cotG 3716176..3716220 -42:+3 GAACACTTATACACTTTTTAAAACCGCGCGTACTATGAGGGTAGT Sacco M, et al. (1995): PE RG
cotH cotH 3716208..3716267 -44:+16 CAATTTGAAATCCTCCTTTTAAAAATATGTTAAGGATGAAGATCCTTACTACCCTCATAG Naclerio G, et al. (1996): PE DB
cotM cotM 1925265..1925309 -42:+3 TTATGCGTTCACCCATTTATACTCCACCGCATATGATGTAAAGCA Henriques AO, et al. (1997): PE DB RG
Reischl S, et al. (2001): RG HB DB
ydgBA-cotP ydgB 602270..602321 None CAAGGAACAATTGGGTGCAGCGGCGCATAATGTACTGTACAGAAAGATGGAA Reischl S, et al. (2001): RG HB DB
cotSA-cotS-ytxO cotSA 3160975..3161019 -42:+3 CCCATTCCGCACAAGTTGGTTGTTCAGCCGTATCATGATTCTAAC Abe A, et al. (1995): NB PE
Takamatsu H, et al. (1998): DB NB RG
Kuwana R, et al. (2002): SDS-PAGE, RG
cotT cotT 1280205..1280260 -63:+10 ATGAATGTACATACACCCAACTTAAGCATCAGGAATATGGTAAAAGGAATAAAAAA Bourne N, et al. (1991): PE
Aronson AI, et al. (1989): S1 NB
Eichenberger P, et al. (2004): HM AR
cotVWX cotV 1251348..1251395 -42:+6 TTTTATTATTCCGCTCTGCACCCCATTTGCATTATATAGAGTATGGAT Zhang J, et al. (1994): NB PE DB RO
cotVWX cotX 1250503..1250550 -43:+5 TATGACTCAGTCAAAATAAGAGGCTCGCTCATTTAATAACAGTAAAAG Zhang J, et al. (1994): NB PE DB RO
cotYZ cotY 1249852..1249899 -44:+4 GTTCACCCACACCAAGTGGGGCACGGGTACATATGTTGTTAAGGACTA Zhang J, et al. (1994): NB PE DB RO
cwlC cwlC 1872782..1872828 -41:+6 AATCGTACAAGCAGAAGCCGTGTTTTTTCATATCCTGTAATGAGGTG Kuroda A, et al. (1993): RG DB NB PE
cwlH cwlH 2648879..2648932 -40:+14 AAAGGCTGTCCATCTCTCTGTTTTCTGCATTCTTATTAATAGGGAGGGATAGAA Nugroho FA, et al. (1999): RG PE HM
rnc-smc-ftsY ftsY 1668682..1668736 -50:+5 ACTCCAATACTTACGGGAGGAATACAGCTTGTCCTTTGAGGGGGCAAAAGAGAAA Kakeshita H, et al. (2000): PE
gerE gerE 2904075..2904122 -42:+6 TGTAAACGTCACCTCCTGCGCCCTTCTTACATATGATATCTCGACTAT Cutting S, et al. (1989): PE RG
gerPABCDEF gerPA 1149811..1149849 None TTTCTCTCACGCATATGTGCGTTTGTCATAAGCTATCGT Behravan J, et al. (2000): OV RG
Eichenberger P, et al. (2004): HM
spoIVCB-spoIIIC spoIVCB 2652141..2652188 -39:+9 CGGTACAGACACAGACAGCCTCCCGGTCACATACATTTACATATAGGC Kunkel B, et al. (1988): PE RG
Kroos L, et al. (1989): RO, SDS-PAGE
spoVFAB-asd-dapG-dapA spoVFA 1743566..1743616 -40:+11 TTTTATATTCACCGGTATTTCCTTTTGATCATAAGATGAAGGGGAGCTTAA Chen NY, et al. (1993): PE
Daniel RA & Errington J (1993): RG PE DB
spoVK spoVK 1873339..1873385 -42:+5 GGCGTTTGTCACAATCGGCATCCGCTTGAATATCATATAGAGAGAAC Foulger D & Errington J (1991): PE RG DP DB
sps spsA 3892172..3892215 -39:+5 CCTAGCGCAACTTGAGCATAAGCAACATAAGATAACGATAGTTT Eichenberger P, et al. (2004): Race-PCR
sspG-yurS sspG 3353030..3353072 -40:+3 CGTCCAATCTCTTTACTCTCCTATCGAATATCCTGTCACTATC Bagyan I, et al. (1998): PE RG DB
tgl tgl 3211574..3211632 -35:+24 TAACTTTCATTGCCCAAGCTCTTTGCATATCTTATAAAAAACAAGGGGGGCTAAACATG Kobayashi K, et al. (1998): HM
Eichenberger P, et al. (2004): Race-PCR
yabG yabG 51527..51572 -42:+4 TGTTTTGCGCACCACATGGACTGCCGCTACATAGGCTAGAGAAGGA Takamatsu H, et al. (2000): PE
ycsFGI-kipIAR-ycsK ycsK ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yfhP yfhP 934902..934939 None GTTGTACACTAAGGGCACAGTACGATAATATGTTACAT Fujita M (1999): in-vitro transcription
Yamamoto H, et al. (1999): NB RG
yfhP yfhP 934890..934928 None AGGGCACAGTACGATAATATGTTACATTAAATAGTAATA Fujita M (1999): in-vitro transcription
Yamamoto H, et al. (1999): NB RG
yfnHGFED yfnE 800509..800551 -37:+6 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC Eichenberger P, et al. (2004): Race-PCR
yfnHGFED yfnH 797658..797702 -39:+6 TTGGTCACCAAGGCTGGCTTTCTCTCATATCATTACAGTAGATTT Eichenberger P, et al. (2004): Race-PCR
yhcOP yhcO 988970..989019 -39:+11 AATGACACACTGCGAACTCAGGCTGCATAGAGTAAAAATAAAAAGGTACA Eichenberger P, et al. (2004): Race-PCR
yhjR yhjR 1135459..1135513 -37:+18 CTCCGCACATCTCTCCCTGCCCAACATATACTTTTACAGAAGCCCAATTCCTAAG Eichenberger P, et al. (2004): Race-PCR
yitBA-yisZ yitB 1171811..1171855 -38:+7 ACCTGAACCTTTATGCAAAAAATGAATAGTCTGCCTATAACTCGA Eichenberger P, et al. (2004): Race-PCR
yitCD yitC 1171885..1171937 -40:+13 TGCGGAACCATTAAGAGCCCGGCTGAATATGCTTTTTAGCAAAATGGTTTTAT Eichenberger P, et al. (2004): Race-PCR
yjcB-yjcZ-spoVIF yjcB 1252068..1252124 -45:+12 TTTTTGTTTTTTTAACGAGGCGGTCTCGCTCAGCATATATCATAAGCGGGGGGATAA Kuwana R, et al. (2003): NB DB PE
yjcB-yjcZ-spoVIF yjcZ 1252350..1252403 -43:+11 TGCGAATATCCAAGCCGATCCCAGCAGCTCACATAGTGTATAGAGAGTAAAGGA Kuwana R, et al. (2003): NB DB PE
yjcB-yjcZ-spoVIF yjcC 1252626..1252681 -45:+11 ATGTTGGAAAAGCACATTGTATTATGTGCATTCATACAATACCGTATTACTCCGCC Kuwana R, et al. (2003): NB DB PE
ykuD ykuD 1476311..1476371 -38:+23 AATGTAGCAGGATGGGCTCCTCATCAATACTTATAAGTAAAAAAGGAGGATGAGGAAACTG Eichenberger P, et al. (2004): Race-PCR
Kodama T, et al. (2000): NB DB
ykvPQ ykvP ND ND ND Kodama T, et al. (2000): NB DB
ylbDE ylbD 1566889..1566939 -38:+13 AGGCGAACACAATGCCCGACAAAACGATACATTGTAGTAGGTAACGATTTT Eichenberger P, et al. (2004): Race-PCR
ymaG ymaG ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yndL yndL 1914290..1914341 -43:+9 AAAATGAGAAGAACAGCGCCCGGGCTAATGGTATATAATATTGTGAATTTAA Silvaggi JM, et al. (2006): PE NB DB
Eichenberger P, et al. (2004): AR
yngK yngK 1958802..1958844 -38:+5 TTAATCACCCTTTTATAGCCCGGGAATACCGTAATAGCGAATA Eichenberger P, et al. (2004): Race-PCR
yoaN yoaN 2038004..2038055 -37:+15 TAGGCACAGCAATCTAAGATTCTGCATAGGCTGAAATAAAATCTTGTTCATT Costa T, et al. (2004): NB RG HM
Eichenberger P, et al. (2004): Race-PCR
yobW yobW 2083364..2083415 -43:+9 ATTTCAGCTACTATTTCCGACCGGATAAGCATACACTTCTCAACGGAGGGGA Henriques AO, et al. (1997): PE HM DB RG
yodHI yodH 2132600..2132656 -36:+21 TCATAAACCTATGTCTTTATACGACATATGATAAGGAAAAAGGAGGATTCGATATTG Eichenberger P, et al. (2004): Race-PCR
ypqA ypqA 2336718..2336766 -37:+12 TTTATAACAACATCTGGCATAGACGCATAATCTGGTTAAAAAAGGCGGT Eichenberger P, et al. (2004): Race-PCR
yqfQ yqfQ ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yrkC yrkC 2714737..2714787 -38:+13 TTTAGCACACTCCCTTAATAAATGCATAGGATACTATCACAAAAATTTATA Kuwana R, et al. (2002): SDS-PAGE, RG
Eichenberger P, et al. (2004): Race-PCR
ysnD ysnD 2896789..2896834 -37:+9 ATAGGCACTTCTCTTGTTCCCTCGGCATACATTAATGATATCTTGC Eichenberger P, et al. (2004): Race-PCR
ytaA ytaA ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
ytcC ytcC ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
ytlABCD ytlA 3131335..3131378 -36:+8 GCATTCACACATTTTTATACCCATCATACGATATGTAAAGCAAA Eichenberger P, et al. (2004): Race-PCR
ywrJ ywrJ ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yxeE yxeE 4064547..4064594 -35:+13 ATGCGTGCCACTGTGCCAATGACTACATAAGTTATAAGGAATTCACCC Eichenberger P, et al. (2004): Race-PCR
Takamatsu H, et al. (2000): SDS-PAGE




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai