Hpr alignment

aprE_2 -TATCATCATGCTTTGAAAA-----AATATCACG-----ATAATATCCATTGTTCTC--
nprE_1 -------CTTGACTCATCTT-----GATATTATT-----CAACAAAAACAAACACAGGA
aprE_3 ---------TAGCGAGAGAT-----GATATACCT-----AAATAGAGATAAAATCATCT
sinI_4_compl -ATCACCAGAATTTTTTTCC-----AATATACCT-----TTATTATAATCGTATTTT--
sinI_3_compl TGGTAAAAAAGTTAGCTTGA-----AATATTATT-----TTGCAGATAAAACAATCC--
sinI_1_compl TGGTAAAAAAGTTAGCTTGA-----AATATTATT-----TTGCAGATAAAACAATCC--
aprE_4 ----AAAATGGGTCTACTAA-----AATATTATT-----CCATCTATTACAATAAA---
sinI_2 ---TAACTTTTTTACCATTC-----GACATCATT-----CTCGTTTTTTTTGAGAAAAT
yclF_2 ----------ATGATTGAGG-----AATATGATT-----TTATTTATGC----------
yclF_2 ----------TTTGCTGTTC-----AATATGATT-----GACCTTGCCC----------
yclF_1_compl ----------CCTGATCAAT-----AATATAATT-----TCTCAAATTA----------
yclF_1_compl ----------TTCTTTTGCT-----AATATAATT-----AATCCGGCAC----------
aprE_1_compl TTTCAAAGCATGATGATAAA-----AGTATTCTG-----AAAAATAAACTTTACAGAAA
nprE_2_compl ACTTTATATTGTTATATTAA-----ACTAGCATT-----CTGGAATACTC---------
epr ----------AGACAGACCC-----GATAATAAT-----CAGCGGCATG----------
Link to : Weight matrix