SigD alignment

cheV ----GCTGCCA---TTCA----CTTTTTACAAATTAC---GCCGATAT---ATACAGT/A/CAATACT------
degR ---CAAAATAG---AAAA-----GAAAATAAAAATAA---GCCGATAT---AACTATT/G/AACCAGA------
dltA ----ATAAAGA---TTCA----TTTTCAAAAACATAC---GCCGATAT---ATTAATTTGAGGGA---------
epr CCTTCTTACTA---TTAA-----TCTCTCTTTTTTTC---TCCGATAT---ATATAT/CA/AACATC-------
flgB --CATTTTTCT---TCAA-----AAAGTTTCAAAAAT---GCCGAAAA---GAAAGG/A/GAAAAAACAG----
hag ----TTTTGTA---TTAA----CAAAATCAGAGACAA---TCCGATAT---TAATGA/TG/TAGC---------
lytA ---TTTTTCTT---TAAA-----ATATAAAATAGGTT---GACGATAA---AATATAAT/GA/GGTGA------
lytD ---TTCACCTA---TAAA-----TGAAGCATGCGCGT---GCCGATAA---ATAAACT/A/GTTTTATA-----
lytF --TAAAAAGGC---AAAA----CGATGAGACAAATGT---GCCGATAT---AAAAAA/G/AAACAGCAAAT---
mcpA -TTTTGCTGTA---TATA-----TTTACCCATTTCCA---GCCGATAT---GAAGGGTAGCATAAAA-------
mcpB ---TTTTATTT---TAAA------ACTTTTTTAAGCA---GCCGATAT---ATACTGTATCA------------
mcpC ---TTTGATTA---TTCA---TTTTTCAAACGAAAGG---GCCGATAT---AGAAATT/A/GGAGGGGA-----
motA ---AATGTCCC---TAAA----GTTCCGGGCACCAAA---ACCGATAT---TAACCAT/A/GACA---------
nfrA -----TTTCAC---TTTT-----GAGATCACTTTTTT---TCGGATAT---GATAAAAAG/T/GATA-------
sigA -CTTCTTTGGC---TCAA---GAAATCGTTACATTGA---ACCGATCT---TTAAAATAACTGGAG--------
tlpA ---TTTCAATG---TAAT-----TTAAAGGAAGATCC---GCCGATAT---AATTTGTAAATTATT--------
tlpB ---TTTTTTAT---TAAA---CCTTTTATCCTAGTTT---GACGATAT---TAGATTTATCT------------
tlpC -----CTAAAA---TAAA---ACTTTAAACCCAAAAA---CCCGATAA---GTAATATGACCTGC---------
ybdO ---TTTGAGGT---TAAT----ATATACATTATATTC---GCCGATAA---AAAAGAATAAGAGAGAATAC---
yfmT -----TGAACC---GATA-----GAAAAAATAGATTC---GCCCATAT---TTTGATTTGCGGTTATAAAGGAG
hemAT ---TCTGCAGC---TTCA----TTCATGTTTCCCTTG---GCCGATAA---AAAAGAAAAAGGCT---------
yjbJ -GCCCGCTTTC---AAGT---TTCAGTTCTTTGCTCA---GCCAATAT---ACAAACGGTCTGACA--------
yjcP ---CAAATTGT---TAAT----CGATAACTTTTCATT---CCCGATAT---TAAAAATGGGAGT----------
yjfB ---TTTCACTG---TAAA------ATCATACAAACCC---GCCGATAG---GTAAGGCATAGGAGGTG------
ylqB ---AAATACGC---TAAA----TATCATCCAATTTAT---TCCGATAT---TGTATATGAACCCTA--------
yoaH ---TATCACTA---TAAA-----ACTTGATAACACGT---GTCGATAT---TATGGACATGAGC----------
yscB ---AAGAAATG---TAAA---ACAAAGTTAATCTCTG---ACCGATAT---AAGGAGCAGAAGGGAGCCTGA--
yvyC ----ATATGTG---TAAT-----CTTATCTCGACTTA---GTCGATAT---AAACGATA/G/ATT---------
yvyF -----AGAAGC---TAAA----TGATTCTGTTTTTAT---GCCGATAT---AATCACT/A/GAAA---------
yxkC ---ATATTGAC---TAAG-------AGAAATAATATA---GGCATTAT---AGTACATATGTTTCGTAC-----
Link to : Weight matrix