Spo0A alignment

abrB_1 -GAAGGTAAGGATTT---TGTCGAA---TAATGACGAAGAAAAATAT
abrB_2 GATTTTGTCGAATAA---TGACGAA---GAAAAATATAATTTAAA--
dltA ----AATCATGTGAT---TGTCGAA---AAAACGGGAAGGGAATTTT
kinC_1 TTTTACTCAATTATT---TGTCGAA---GAATGGTACAATAAG----
kinC_2_r -TGTGTTTCTCTACT---TATTGTA---CCATTCTTCGA--------
sin_r AAAAAACGAGAATGA---TGTCGAA---TGGT---------------
spo0A_1 ---ATATAGCGGTTT---TGTCGAA---TGTAAACATGTAGCA----
spo0A_2 TCAAATTTCATTTTT---AGTCGAA---AAACAGAGAAAAACATAGA
spo0A_3_r AAGGAAACGTGAATT---TGTCGAA---AAATCTTCTTTT-------
spo0F_1 AAAATGCTCAGAAAA---TGTCGTA---AAGTAGAC-----------
spo0F_2 ---ACTGCTTACTTT---TGACGAA---AATCATAATATTGGGGTGT
spoIIAA_1_r TAATTACTTAAATTT---TGTCCAG---TCTCCCATCG---------
spoIIAA_2 TGAAGGAATTCATTC---CGTCGAA---ATCGAAACACTCA------
spoIIAA_3 AAATTTAAGTAATTA---TGCCGAA---TGACCACTAGTTTTGTC--
spoIIAA_4 ------CCTTCACCG---TGACAAA---ACTAGTGGTC---------
spoIIE_1_r ------------TGT---TGTCTAA---A------------------
spoIIE_2 GGAAATTCTTTTCAT---AAACGAA---TATCAAGGCAGAA------
spoIIE_3 TATCAAGGCAGAAAC---CGTCGAA---GATTTCTTTGGT-------
spoIIE_4_r GCACAGATAGGATTT---TGTCAAA---AGAAGGTAACAAT------
spoIIGA_1_r ----TCTGCTTAATT---TGTCGAG---GAAGTATAATGAGAGGA--
spoIIGA_2_r TTTTTCAGGGAAATC---TGCTTAA---TTTGTCGAGGA--------
spoIIGA_3_r CTCTGTGGGAAAGTC---TGTCAAT---TAATGTTGAGA--------
spoIIGA_4_r ---TCTGTCAATTAA---TGTTGAG---AGGAAAATACAAT------
Link to : Weight matrix