SpoIIID alignment

bofA_1 TCTCATAAGCTTGTACT-AGAACAAGC-GAAG-------------------
bofA_2 ----------TTATTTT-AGGACTGGT-TATTC------------------
cotC_1 -----------ATCATT-TGGACAGCC-CTTTTTT----------------
cotC_2_r ------ATTTTGCGGCT-TGGACAGTT-AA---------------------
cotD_1 ----------------A-AAGACAGCT-TAATTGCACAC------------
cotD_2 -------------CATC-AGAACATGT-ACCCCTT----------------
cotD_3_r ----------AGTAGGA-TGGACAATT-GGCGCCATCA-------------
cotX_r ---------------AA-TGAGCGAGC-CTCTTA-----------------
spoIID_1_r -----TGACTCTCGTTT-TGGACAGAA-A----------------------
spoIID_2_r --------CTATGGGCA-GGGACAAGC-TAATATGA---------------
spoIIIA_r -------GGCAGACTTT-ATGACAAGC-CTCTCTTT---------------
spoIVCA_1 ----------CCTCATT-TGGACAAAC-AGCTGTTACA-------------
spoIVCA_2 ----------CGACCGA-GGAACAAGC-GATCAAGG---------------
spoIVCB_1 ---------TACAGACA-CAGACAGCC-TCCC-------------------
spoIVCB_2_r ---------ATACTAAA-AAGACAAGC-TCTTTA-----------------
spoIVCB_3_r ----------GCGGTTG-TGGAAAGGC-ATTGTTTTT--------------
spoVD_1_r -----------TGAATT-TGGACAGGT-AGAA-------------------
spoVD_2 ---------CATAAAAT-GAAACAAGC-CTA--------------------
spoVE_1 ---------------GT-TGAACAAGC-AGTATCTGC--------------
spoVE_2_r -------------CTTC-AAGACAAGC-CCTT-------------------
Link to : Weight matrix