We searched for ComA binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for ComA.
| ComA |
rapA |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapA |
Pae |
-189..-174 |
CGCGGGTTCACGAAT |
7.346600 |
| ComA |
rapA |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapA |
Mlo |
-65..-80 |
TCCTGGTCGCCGCAA |
9.526260 |
| ComA |
rapA |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapA |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapA |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
rapC |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapC |
Pae |
-189..-174 |
CGCGGGTTCACGAAT |
7.346600 |
| ComA |
rapC |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapC |
Mlo |
-65..-80 |
TCCTGGTCGCCGCAA |
9.526260 |
| ComA |
rapC |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapC |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapC |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
rapE |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapE |
Pae |
-189..-174 |
CGCGGGTTCACGAAT |
7.346600 |
| ComA |
rapE |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapE |
Mlo |
-65..-80 |
TCCTGGTCGCCGCAA |
9.526260 |
| ComA |
rapE |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapE |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapE |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
srfAA |
Pae |
-133..-148 |
AGCGTCATCCCGCAG |
7.663530 |
| ComA |
srfAA |
Rso |
-248..-263 |
GGCGTGATGCCGGTC |
7.071400 |
| ComA |
srfAA |
Atu |
-128..-113 |
TTCAGGCAGCCGAAT |
7.315600 |
| ComA |
srfAA |
Mlo |
-192..-207 |
CGCGTGCCACCGGCA |
7.086090 |