We searched for CtsR binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for CtsR.
| CtsR |
trxA |
Bha |
-10..-27 |
CCTCAAAGTTGTTCAAC |
6.230170 |
| CtsR |
trxA |
Sau |
-53..-36 |
AATAAAATATGGTTAAA |
7.762310 |
| CtsR |
trxA |
Mpu |
-105..-88 |
ATTCAAAAATAATAAAA |
7.189950 |
| CtsR |
trxA |
Cgl |
-266..-249 |
GGTCAAAGAGAGTTATC |
7.234960 |
| CtsR |
trxA |
Mle |
-97..-114 |
AGTCCATGCTAACCAAA |
6.322520 |
| CtsR |
trxA |
Eco |
-30..-13 |
GGTGAAATAAAGTCAAC |
8.892940 |
| CtsR |
trxA |
EcZ |
-30..-13 |
GGTGAAATAAAGTCAAC |
8.892940 |
| CtsR |
trxA |
Ecs |
-30..-13 |
GGTGAAATAAAGTCAAC |
8.892940 |
| CtsR |
trxA |
Sty |
-30..-47 |
CAACAAAGTTAGTCACA |
6.804630 |
| CtsR |
trxA |
Hin |
-40..-57 |
CGTAAAAAATAGGCAAA |
7.632750 |
| CtsR |
trxA |
Xfa |
-39..-56 |
AGACAATAAACGTCCAA |
6.346700 |
| CtsR |
trxA |
Cje |
-55..-38 |
AGCAAAAGTTAGTTAAA |
6.975920 |
| CtsR |
trxA |
Mlo |
-255..-272 |
GGTCCACGGCGGTCACA |
6.507930 |
| CtsR |
trxA |
Aae |
-74..-91 |
TTTCAAAAATGATAAAA |
6.157180 |
| CtsR |
clpE |
Bsu |
-230..-213 |
AGTCAAAGATAGTCAGA |
15.041600 |
| CtsR |
clpE |
Bha |
-86..-69 |
AGTCAAAGATAGTCAAA |
16.010230 |
| CtsR |
clpE |
Lla |
-76..-93 |
GGTCAGTAATGGTCAAA |
11.763090 |
| CtsR |
clpE |
Spy |
-150..-167 |
GGTCAGTAAAGGTCAAA |
11.042650 |
| CtsR |
clpE |
Spn |
-290..-273 |
GGTCAGTTAAAGTCAAA |
10.326780 |
| CtsR |
clpE |
Sau |
-73..-56 |
GGTCGAAGATAGCAAAT |
6.804170 |
| CtsR |
clpE |
jHp |
-43..-26 |
AGTGTAAAATAGTAAAA |
6.635590 |
| CtsR |
clpE |
Syn |
-249..-266 |
AGTCAAACTTAGTGAAA |
9.517790 |
| CtsR |
clpE |
Nos |
-41..-24 |
AGTCACCCAAAGTCCAA |
6.299260 |
| CtsR |
ctsR |
Bsu |
-38..-21 |
AGTCAAATATAGTCAAA |
14.357940 |
| CtsR |
ctsR |
Bha |
-96..-79 |
AATAAAATTAGGTCAAA |
8.475710 |
| CtsR |
ctsR |
Cac |
-223..-206 |
AAGAAAAAATGGACAAA |
6.046610 |
| CtsR |
ctsR |
Lla |
-54..-37 |
AGTCAGTAATAGTCAAA |
10.815230 |
| CtsR |
ctsR |
Spy |
-76..-59 |
AGTCAGTTTTAGTCAAA |
9.503270 |
| CtsR |
ctsR |
Spn |
-42..-25 |
AGTCAAACAAGGTCAAG |
11.340230 |
| CtsR |
ctsR |
Lin |
-56..-39 |
AGTCAAAAATAGTCAAA |
14.357940 |
| CtsR |
ctsR |
Ype |
-57..-40 |
GATCAATAATACTCAAT |
6.625030 |
| CtsR |
ctsR |
Hin |
-103..-120 |
GGTCAAAATTCGCAAAA |
6.784080 |
| CtsR |
ctsR |
Mlo |
-1..-18 |
CGCCAAGGATGGACAAT |
6.190860 |
| CtsR |
clpP |
Bsu |
-52..-69 |
GGTCAATAAAGGTCAAA |
13.273400 |
| CtsR |
clpP |
Bha |
-76..-93 |
GGTCAAAGAAGGTCAAA |
16.237650 |
| CtsR |
clpP |
Lla |
-88..-105 |
GGTCAAAAAAGGTCAAA |
14.585360 |
| CtsR |
clpP |
Spy |
-103..-120 |
GGTCAATAAAGGTCAAA |
13.273400 |
| CtsR |
clpP |
Spn |
-67..-84 |
GGTCAAAAAAGGTCAAA |
14.585360 |
| CtsR |
clpP |
Lin |
-59..-76 |
GGTCGAAAATGGTCAAA |
13.075050 |
| CtsR |
clpP |
Cgl |
-53..-70 |
TGGCAATGATAGACCAA |
6.257380 |
| CtsR |
clpP |
Ecs |
-28..-45 |
AGTGAAGAACGGTCAAG |
6.066550 |
| CtsR |
clpP |
Mlo |
-145..-162 |
AATCAAGGTTATTCACA |
6.087380 |
| CtsR |
clpP |
Rpr |
-98..-81 |
GATCAAAAATAATAACA |
6.109980 |
| CtsR |
clpP |
Ctr |
-62..-45 |
GGTCAAGAGTAGCCATA |
6.076130 |
| CtsR |
clpP |
Syn |
-230..-247 |
GGCCAGTAATGGTCACA |
7.437990 |