DegU

We searched for DegU binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for DegU.

Transcription Factor Regulated gene organism position cis-element score
DegU aprE Bsu -128..-113 TAAATAGAGATAAAA 5.570240
DegU aprE Bha -129..-114 AAAAATTAATTAAAA 5.570240
DegU aprE Cac -133..-152 AAAAAGTATATCTATAAAG 5.475490
DegU aprE Spy -94..-79 AAAATGTGGTTAAAT 5.884110
DegU aprE Spn -165..-150 TAAATTTTTTTAAAT 5.570240
DegU aprE Mpu -26..-42 TAAATGATAATTAAAT 5.570240
DegU aprE Nme -45..-60 AAAAATTCCGTAATG 5.161620
DegU aprE NmA -45..-60 AAAAATTCCGTAATG 5.161620
DegU aprE Rso -11..-29 AAAATACGCTGGATAATG 5.475490
DegU aprE Nos -28..-10 TAAATGGTCAAAATAAAA 5.570240
DegU aprE Fnu -279..-264 AAAAAACTAATAAAA 5.570240
DegU wapA Bsu -99..-84 TAAAATAAGATAAAT 5.256370
DegU wapA Cac -117..-132 TAAAATAACTTAAAA 5.256370
DegU wapA Lin -179..-161 AAAATACATGCTATAATA 5.570240
DegU wapA Eco -114..-97 TAAATATTTTCCTAATT 5.256370
DegU wapA EcZ -221..-237 TAAATCAACAATAAAA 5.570240
DegU wapA Ecs -96..-80 TAAATGTTCAATAATT 5.256370
DegU wapA Ype 0..-17 AAAATGGCTCCTTAATA 5.570240
DegU wapA Rso -79..-64 AAAATCTGAATAAAA 5.884110
DegU degU Bha -245..-230 AAAAATATAATAAAT 5.570240
DegU degU Cac -264..-248 AAAATATACTTTAATA 5.570240
DegU degU Sau -176..-191 AAAATATAAGTAAAT 5.884110
DegU degU Lin -145..-129 TAAATAGTACTTAAAA 5.570240
DegU degU Eco -131..-149 TAAATAGTCGGCATAAAT 5.570240
DegU degU EcZ -90..-105 AAAATGGCAATAATT 5.570240
DegU degU Ecs -90..-105 AAAATGGCAATAATT 5.570240
DegU degU Ype -147..-131 TAAAACAATGATAAAA 5.256370
DegU degU Hin -191..-175 AAAAAGAGCGGTAAAA 5.570240
DegU degU Xfa -77..-95 TAAATACGCATATTAATG 5.161620
DegU degU Nme -127..-142 AAAATTCAGATAATA 5.570240
DegU degU NmA -127..-142 AAAATTCAGATAATA 5.570240
DegU degU Bme -91..-75 AAAATAAACTTTAAAA 5.884110
DegU degU Syn -243..-261 TAAATCGACCCACTAAAG 5.475490
DegU degU Nos -58..-42 AAAATTTCCGATAAAT 5.884110
DegU comK Bsu -246..-231 AAAAAATCAATAAAT 5.570240
DegU sacX Bsu -99..-114 TAAAAAAACCTAAAT 5.256370
DegU sacX Bha -30..-12 AAAAAGATTATGATAAAG 5.475490
DegU sacX Cac -39..-23 TAAATTTAAGATAAAA 5.570240
DegU sacX Lla -133..-114 AAAATATCAACCAATAAAT 5.884110
DegU sacX Spy -185..-167 AAAATCAAGAATTTAAAG 5.789360
DegU sacX Spn -119..-104 AAAATTGAAATAAAA 5.884110
DegU sacX Sau -63..-48 TAAATATTTTTAAAA 5.570240
DegU sacX Lin -192..-177 AAAAAAAATTTAAAA 5.570240
DegU sacX Mpu -141..-156 AAAAACAAGTTAAAA 5.570240
DegU sacX Mge -88..-103 AAAATAAAACTAATT 5.570240
DegU sacX Uur -61..-76 AAAAAAACATTAATT 5.256370
DegU sacX Eco -15..0 TAAAAGGAGTTAATT 4.942500
DegU sacX EcZ -74..-59 TAAAATTTGATAAAA 5.256370
DegU sacX Ecs -74..-59 TAAAATTTGATAAAA 5.256370
DegU sacX Ype -188..-169 AAAATAGGGGGTTTTAATT 5.570240
DegU sacX Pmu -168..-152 TAAATAGCCAATAAAA 5.570240
DegU sacX Bbu -143..-128 AAAAAATATATAATA 5.256370
DegU sacX Fnu -97..-82 TAAAAATGTTTAAAA 5.256370
DegU sacX Bsu -99..-114 TAAAAAAACCTAAAT 5.256370
DegU sacX Bha -30..-12 AAAAAGATTATGATAAAG 5.475490
DegU sacX Cac -39..-23 TAAATTTAAGATAAAA 5.570240
DegU sacX Lla -133..-114 AAAATATCAACCAATAAAT 5.884110
DegU sacX Spy -185..-167 AAAATCAAGAATTTAAAG 5.789360
DegU sacX Spn -119..-104 AAAATTGAAATAAAA 5.884110
DegU sacX Sau -63..-48 TAAATATTTTTAAAA 5.570240
DegU sacX Lin -192..-177 AAAAAAAATTTAAAA 5.570240
DegU sacX Mpu -141..-156 AAAAACAAGTTAAAA 5.570240
DegU sacX Mge -88..-103 AAAATAAAACTAATT 5.570240
DegU sacX Uur -61..-76 AAAAAAACATTAATT 5.256370
DegU sacX Eco -15..0 TAAAAGGAGTTAATT 4.942500
DegU sacX EcZ -74..-59 TAAAATTTGATAAAA 5.256370
DegU sacX Ecs -74..-59 TAAAATTTGATAAAA 5.256370
DegU sacX Ype -188..-169 AAAATAGGGGGTTTTAATT 5.570240
DegU sacX Pmu -168..-152 TAAATAGCCAATAAAA 5.570240
DegU sacX Bbu -143..-128 AAAAAATATATAATA 5.256370
DegU sacX Fnu -97..-82 TAAAAATGTTTAAAA 5.256370